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Found 7277 results for class "Irradiation". Showing entries 1-20.
| Graph | Cluster | Transcripts | Mean logCPM | Classification | Smed/Human type | Human gene | Annotation |
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Cluster-9701.2 | RNA1509_15, RNA1509_14264 | 8.7 | Irradiation Int S/G2/M Germline |
RNA1509_15 {Length: 1193} {Type: 5UTR_CDS_3UTR} {RNA815_5866.1} {RNA1310_31679} RNA1509_14264 {Length: 1583} {Type: 5UTR_CDS_3UTR} {RNA815_5866.1} {RNA1310_31679} |
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Cluster-6298.0 | RNA1509_457, RNA1509_829 | 8.48 | Irradiation |
RNA1509_457 {Length: 509} {Type: 5UTR_CDS_3UTR} {Pfam: Carbohydrate binding [PF10645.4, score=24.0]} {UniRef50_A0A0D1XG57, e=0.001, Verruconis gallopava strain CBS 43764 unplaced genomic scaffold supercont1.29, whole genome shotgun sequence n=1 Tax=Verruconis gallopava RepID=A0A0D1XG57_9PEZI [Plants:Ascomycota]} {RNA815_865.1} {RNA1310_10803} RNA1509_829 {Length: 607} {Type: 5UTR_CDS_3UTR} {Pfam: Carbohydrate binding [PF10645.4, score=23.9]} {UniRef50_A0A0D1XG57, e=0.001, Verruconis gallopava strain CBS 43764 unplaced genomic scaffold supercont1.29, whole genome shotgun sequence n=1 Tax=Verruconis gallopava RepID=A0A0D1XG57_9PEZI [Plants:Ascomycota]} {RNA815_865.3} {RNA1310_10803} |
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Cluster-6298.1 | RNA1509_30, RNA1509_379 | 8.44 | Irradiation |
RNA1509_30 {Length: 512} {Type: 5UTR_CDS_3UTR} {Pfam: Carbohydrate binding [PF10645.4, score=24.1]} {UniRef50_A0A0D1XG57, e=0.001, Verruconis gallopava strain CBS 43764 unplaced genomic scaffold supercont1.29, whole genome shotgun sequence n=1 Tax=Verruconis gallopava RepID=A0A0D1XG57_9PEZI [Plants:Ascomycota]} {RNA815_865.1} {RNA1310_10803} RNA1509_379 {Length: 497} {Type: 5UTR_CDS_3UTR} {Pfam: Carbohydrate binding [PF10645.4, score=24.0]} {UniRef50_A0A0D1XG57, e=0.001, Verruconis gallopava strain CBS 43764 unplaced genomic scaffold supercont1.29, whole genome shotgun sequence n=1 Tax=Verruconis gallopava RepID=A0A0D1XG57_9PEZI [Plants:Ascomycota]} {RNA815_865.1} {RNA1310_10803} |
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Cluster-7993.3417 | RNA1509_235, RNA1509_728 | 8.27 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
Pluripotency maintenance | PPIF | RNA1509_235 {Length: 1500} {Type: 5UTR_CDS_3UTR} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.16, score=156.7]} {Human: PPIF, peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:9259], e=6e-62} {UniRef50_Q93W25, e=4e-77, Peptidyl-prolyl cis-trans isomerase n=121 Tax=cellular organisms RepID=Q93W25_WHEAT [Unassigned:]} {Drosophila: Cyp1, Cyclophilin 1 [Source:FlyBase gene name;Acc:FBgn0004432], e=1e-60} {RNA815_7478.2} {RNA1310_24761} RNA1509_728 {Length: 1028} {Type: 5UTR_CDS_3UTR} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.16, score=158.6]} {Human: PPIF, peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:9259], e=9e-64} {UniRef50_Q93W25, e=4e-77, Peptidyl-prolyl cis-trans isomerase n=121 Tax=cellular organisms RepID=Q93W25_WHEAT [Unassigned:]} {Drosophila: Cyp1, Cyclophilin 1 [Source:FlyBase gene name;Acc:FBgn0004432], e=1e-62} {RNA815_7478.2} {RNA1310_24761} |
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Cluster-7993.3425 | RNA1509_23446 | 8.07 | Irradiation Int S/G2/M |
PPIA | RNA1509_23446 {Length: 936} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.16, score=155.0]} {Human: PPIA, peptidylprolyl isomerase A (cyclophilin A) [Source:HGNC Symbol;Acc:9253], e=9e-65} {UniRef50_Q93W25, e=3e-77, Peptidyl-prolyl cis-trans isomerase n=121 Tax=cellular organisms RepID=Q93W25_WHEAT [Unassigned:]} {Drosophila: Cyp1, Cyclophilin 1 [Source:FlyBase gene name;Acc:FBgn0004432], e=5e-64} {Celegans: cyn-3, Caenorhabditis elegans Protein CYN-3 (cyn-3) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_074350], e=8e-76} {RNA815_7478.2} {RNA1310_24761} | |
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Cluster-7993.5579 | RNA1509_58, RNA1509_1006, RNA1509_1512, RNA1509_11862 | 8.04 | Irradiation |
Neoblast; X1 | HSPB6 | RNA1509_58 {Length: 1908} {Type: 5UTR_CDS_3UTR} {Pfam: Hsp20/alpha crystallin family [PF00011.16, score=94.2]} {Human: HSPB6, heat shock protein, alpha-crystallin-related, B6 [Source:HGNC Symbol;Acc:26511], e=0.002} {UniRef50_H9LIX5, e=5e-14, Small heat shock protein (Fragment) n=1 Tax=Crassostrea ariakensis RepID=H9LIX5_CRAAR [Invertebrates:Mollusca]} {Drosophila: CG14207, , e=5e-05} {RNA815_5698.1} {RNA1310_21023.1} {Smed: dd_Smed_v6_1039_0_1} RNA1509_1006 {Length: 1866} {Type: 5UTR_CDS_3UTR} {Pfam: Hsp20/alpha crystallin family [PF00011.16, score=92.7]} {Human: HSPB6, heat shock protein, alpha-crystallin-related, B6 [Source:HGNC Symbol;Acc:26511], e=0.002} {UniRef50_H9LIX5, e=6e-13, Small heat shock protein (Fragment) n=1 Tax=Crassostrea ariakensis RepID=H9LIX5_CRAAR [Invertebrates:Mollusca]} {Drosophila: CG14207, , e=6e-05} {Celegans: F08H9.3, Caenorhabditis elegans Protein F08H9.3 (F08H9.3) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_074184], e=2e-07} {RNA815_5698.1} {RNA1310_21023.1} {Smed: dd_Smed_v6_1039_0_1,dd_Smed_v6_5406_0_1} {WURTZEL: Neoblast [dd_Smed_v6_5406_0_1, NA]} RNA1509_1512 {Length: 1325} {Type: 5UTR_CDS_3UTR} {Pfam: Hsp20/alpha crystallin family [PF00011.16, score=95.7]} {Human: HSPB6, heat shock protein, alpha-crystallin-related, B6 [Source:HGNC Symbol;Acc:26511], e=0.001} {UniRef50_H9LIX5, e=5e-14, Small heat shock protein (Fragment) n=1 Tax=Crassostrea ariakensis RepID=H9LIX5_CRAAR [Invertebrates:Mollusca]} {Drosophila: CG14207, , e=3e-05} {RNA815_5698.2} {RNA1310_27451.1} {Smed: dd_Smed_v6_1039_0_1} RNA1509_11862 {Length: 1638} {Type: 5UTR_CDS_3UTR} {Pfam: Hsp20/alpha crystallin family [PF00011.16, score=93.2]} {Human: HSPB6, heat shock protein, alpha-crystallin-related, B6 [Source:HGNC Symbol;Acc:26511], e=0.002} {Drosophila: CG14207, , e=5e-05} {RNA815_5698.1} {RNA1310_21023.1} {Smed: dd_Smed_v6_1039_0_1,dd_Smed_v6_5406_0_1} {WURTZEL: Neoblast [dd_Smed_v6_5406_0_1, NA]} |
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Cluster-7993.3428 | RNA1509_198, RNA1509_13916 | 7.88 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
Pluripotency maintenance | PPIF | RNA1509_198 {Length: 492} {Type: 5UTR_CDS_3UTR} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.16, score=35.0]} {Human: PPIF, peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:9259], e=2e-11} {Drosophila: CG7768, , e=2e-11} {RNA815_7478.2} {RNA1310_24761} RNA1509_13916 {Length: 473} {Type: 5UTR_CDS_3UTR} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.16, score=35.1]} {Human: PPIF, peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:9259], e=2e-11} {Drosophila: CG7768, , e=1e-11} {RNA815_7478.2} {RNA1310_24761} |
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Cluster-7993.5007 | RNA1509_143 | 7.57 | Irradiation |
HSPB6 | RNA1509_143 {Length: 816} {Type: 5UTR_CDS_3UTR} {Pfam: Hsp20/alpha crystallin family [PF00011.16, score=56.2]} {Human: HSPB6, heat shock protein, alpha-crystallin-related, B6 [Source:HGNC Symbol;Acc:26511], e=0.004} {Drosophila: CG14207, , e=1e-04} {Celegans: hsp-25, Caenorhabditis elegans Protein HSP-25, isoform a. [Source:RefSeq mRNA;Acc:NM_001029203], e=3e-06} {RNA815_5698.2} {RNA1310_17173.1} | |
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Cluster-3306.0 | RNA1509_561 | 7.35 | Irradiation Int S/G2/M |
HMGB2 | RNA1509_561 {Length: 2018} {Type: 5UTR_CDS_3UTR} {Pfam: HMG (high mobility group) box [PF00505.14, score=124.4]} {Human: HMGB2, high mobility group box 2 [Source:HGNC Symbol;Acc:5000], e=2e-46} {UniRef50_Q1JPR1, e=2e-69, High mobility group protein n=7 Tax=Platyhelminthes RepID=Q1JPR1_SCHMA [Invertebrates:]} {Drosophila: Dsp1, Dorsal switch protein 1 [Source:FlyBase gene name;Acc:FBgn0011764], e=2e-45} {RNA815_4632} {RNA1310_15889.1} | |
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Cluster-7993.2839 | RNA1509_194 | 7.35 | Irradiation |
RNA1509_194 {Length: 752} {Type: 5UTR_CDS_3UTR} {Pfam: EF-hand domain [PF13405.1, score=26.8]} {Drosophila: Muc96D, Mucin 96D [Source:FlyBase gene name;Acc:FBgn0051439], e=0.010} {RNA815_20222.2} {RNA1310_41187} | ||
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Cluster-1698.0 | RNA1509_635 | 7.32 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
X1 | PRMT1 | RNA1509_635 {Length: 2074} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: Ribosomal protein L11 methyltransferase (PrmA) [PF06325.8, score=42.8]} {Human: PRMT1, protein arginine methyltransferase 1 [Source:HGNC Symbol;Acc:5187], e=1e-169} {UniRef50_E9J265, e=1e-178, Putative uncharacterized protein (Fragment) n=35 Tax=Hymenoptera RepID=E9J265_SOLIN [Invertebrates:Arthropoda]} {Drosophila: Art1, Arginine methyltransferase 1 [Source:FlyBase gene name;Acc:FBgn0037834], e=1e-170} {RNA815_7554} {RNA1310_17985} {Smed: dd_Smed_v6_1755_0_1} |
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Cluster-7993.2648 | RNA1509_2093 | 7.27 | Irradiation Int S/G2/M Germline S/G2/M, no gonads |
X1; X2 | DDX6 | RNA1509_2093 {Length: 3754} {Type: 5UTR_CDS_3UTR} {Pfam: DEAD/DEAH box helicase [PF00270.24, score=139.1]} {Human: DDX6, DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Source:HGNC Symbol;Acc:2747], e=0.0} {UniRef50_P23128, e=0.0, Putative ATP-dependent RNA helicase me31b n=338 Tax=Eukaryota RepID=DDX6_DROME [Invertebrates:]} {Drosophila: me31B, maternal expression at 31B [Source:FlyBase gene name;Acc:FBgn0004419], e=0.0} {RNA815_1155.1} {RNA1310_2612} {Smed: dd_Smed_v6_1034_0_1,dd_Smed_v6_11802_0_1} |
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Cluster-12643.0 | RNA1509_320 | 7.26 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
Sexual_biased | NAP1L1 | RNA1509_320 {Length: 2087} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: Nucleosome assembly protein (NAP) [PF00956.13, score=262.6]} {Human: NAP1L1, nucleosome assembly protein 1-like 1 [Source:HGNC Symbol;Acc:7637], e=4e-69} {UniRef50_C1LHF9, e=6e-70, NAP-1-related protein n=5 Tax=Digenea RepID=C1LHF9_SCHJA [Plants:]} {Drosophila: Nap1, Nucleosome assembly protein 1 [Source:FlyBase gene name;Acc:FBgn0015268], e=3e-52} {RNA815_5138.1} {RNA1310_13378} {Smed: dd_Smed_v6_997_0_1} |
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Cluster-13316.4 | RNA1509_225, RNA1509_7006 | 7.18 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
X1 | SERBP1 | RNA1509_225 {Length: 2997} {Type: 5UTR_CDS_3UTR} {Pfam: Hyaluronan / mRNA binding family [PF04774.10, score=62.6]} {Human: SERBP1, SERPINE1 mRNA binding protein 1 [Source:HGNC Symbol;Acc:17860], e=3e-13} {UniRef50_K1RAY9, e=8e-16, Plasminogen activator inhibitor 1 RNA-binding protein n=2 Tax=Crassostrea gigas RepID=K1RAY9_CRAGI [Invertebrates:Mollusca]} {Drosophila: vig2, vig2 [Source:FlyBase gene name;Acc:FBgn0046214], e=2e-14} {RNA815_4163.1} {RNA1310_11680.1} {Smed: dd_Smed_v6_697_0_1} RNA1509_7006 {Length: 2935} {Type: 5UTR_CDS_3UTR} {Pfam: Hyaluronan / mRNA binding family [PF04774.10, score=62.6]} {Human: SERBP1, SERPINE1 mRNA binding protein 1 [Source:HGNC Symbol;Acc:17860], e=3e-13} {UniRef50_K1RAY9, e=8e-16, Plasminogen activator inhibitor 1 RNA-binding protein n=2 Tax=Crassostrea gigas RepID=K1RAY9_CRAGI [Invertebrates:Mollusca]} {Drosophila: vig2, vig2 [Source:FlyBase gene name;Acc:FBgn0046214], e=2e-14} {Celegans: vig-1, Caenorhabditis elegans Protein VIG-1, isoform a (vig-1) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_170974], e=1e-06} {RNA815_4163.1} {RNA1310_11680.1} {Smed: dd_Smed_v6_697_0_1} |
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Cluster-7993.6356 | RNA1509_44 | 7.08 | Irradiation Int S/G2/M Germline |
TUBB2C | RNA1509_44 {Length: 1986} {Type: 5UTR_CDS_3UTR} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.20, score=230.0]} {Human: TUBB2C, tubulin, beta 2C [Source:HGNC Symbol;Acc:20771], e=0.0} {UniRef50_P07437, e=0.0, Tubulin beta chain n=1476 Tax=Eukaryota RepID=TBB5_HUMAN [Invertebrates:]} {Drosophila: betaTub56D, beta-Tubulin at 56D [Source:FlyBase gene name;Acc:FBgn0003887], e=0.0} {RNA815_4702.1} {RNA1310_28419} | |
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Cluster-7993.2471 | RNA1509_272, RNA1509_1513, RNA1509_11555 | 7.08 | Irradiation |
RNA1509_272 {Length: 606} {Type: 5UTR_CDS_3UTR} {Pfam: PAN domain [PF14295.1, score=29.8]} {UniRef50_UPI0002B47738, e=1e-30, PREDICTED: uncharacterized protein LOC101238014 n=1 Tax=Hydra vulgaris RepID=UPI0002B47738 [Invertebrates:Cnidaria]} {RNA815_28801.1} {RNA1310_65774.1} RNA1509_1513 {Length: 591} {Type: 5UTR_CDS_3UTR} {Pfam: PAN domain [PF14295.1, score=29.8]} {UniRef50_UPI0002B47738, e=1e-30, PREDICTED: uncharacterized protein LOC101238014 n=1 Tax=Hydra vulgaris RepID=UPI0002B47738 [Invertebrates:Cnidaria]} {RNA815_28801.1} {RNA1310_65774.1} RNA1509_11555 {Length: 572} {Type: 5UTR_CDS_3UTR} {Pfam: PAN domain [PF14295.1, score=30.0]} {UniRef50_UPI0002B47738, e=1e-30, PREDICTED: uncharacterized protein LOC101238014 n=1 Tax=Hydra vulgaris RepID=UPI0002B47738 [Invertebrates:Cnidaria]} {RNA815_28801.2} {RNA1310_65774.3} |
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Cluster-7993.2843 | RNA1509_298, RNA1509_5624 | 7.06 | Irradiation |
RNA1509_298 {Length: 867} {Type: 5UTR_CDS_3UTR} {Pfam: EF-hand domain [PF13405.1, score=26.3]} {RNA815_20222.2} {RNA1310_41187} RNA1509_5624 {Length: 843} {Type: 5UTR_CDS_3UTR} {Pfam: EF-hand domain [PF13405.1, score=26.4]} {RNA815_20222.2} {RNA1310_41187} |
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Cluster-7993.10654 | RNA1509_548 | 7.02 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
X1 | RPL4 | RNA1509_548 {Length: 1356} {Type: 5UTR_CDS_3UTR} {Pfam: Ribosomal protein L4/L1 family [PF00573.17, score=155.1]} {Human: RPL4, ribosomal protein L4 [Source:HGNC Symbol;Acc:10353], e=1e-151} {UniRef50_P02385, e=1e-145, 60S ribosomal protein L4-B n=113 Tax=Eukaryota RepID=RL4B_XENLA [Invertebrates:]} {Drosophila: RpL4, Ribosomal protein L4 [Source:FlyBase gene name;Acc:FBgn0003279], e=1e-138} {RNA815_10660} {RNA1310_26790} {Smed: dd_Smed_v6_211_0_1} |
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Cluster-7993.3388 | RNA1509_278, RNA1509_651, RNA1509_3406 | 6.98 | Irradiation |
RNA1509_278 {Length: 531} {Type: 5UTR_CDS_3UTR} {RNA815_39094} {RNA1310_73924} RNA1509_651 {Length: 528} {Type: 5UTR_CDS_3UTR} {RNA815_39094} {RNA1310_73924} RNA1509_3406 {Length: 615} {Type: 5UTR_CDS_3UTR} {RNA815_39094} {RNA1310_73924} |
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Cluster-7993.3387 | RNA1509_717 | 6.91 | Irradiation |
Epidermal lineage (early + late + mature); X2; Xins | OTOP3 | RNA1509_717 {Length: 3926} {Type: 5UTR_CDS_3UTR} {Pfam: Otopetrin [PF03189.8, score=204.9]} {Human: OTOP3, otopetrin 3 [Source:HGNC Symbol;Acc:19658], e=2e-14} {UniRef50_G4VMW5, e=1e-81, Putative otopetrin n=2 Tax=Schistosoma RepID=G4VMW5_SCHMA [Invertebrates:Platyhelminthes]} {Drosophila: CG42265, , e=1e-45} {RNA815_6393} {RNA1310_7130.2} {Smed: dd_Smed_v6_12986_0_1,dd_Smed_v6_13612_0_4,dd_Smed_v6_13612_0_3} {WURTZEL: Epidermal lineage (early + late + mature) [dd_Smed_v6_12986_0_1, otopetrin 1 (OTOP1)]} |