M. lignano Neoblast Screen 2016 Transcriptional signatures of somatic neoblasts and germline cells in Macrostomum lignano. (2016) Grudniewska M*, Mouton S*, Simanov S, Beltman F, Grelling M, de Mulder K, Arindrarto W, Weissert P, van der Elst S, Berezikov E. eLife 2016;5:e20607. Home Download

Text search

search Exact search

Found 199 results for log2(JuvG2M/JuvG1) between 0 and -1 and fdr <= 0.05. Showing entries 1-20.

Graph Cluster Transcripts Mean logCPM Classification Smed/Human type Human gene Annotation
1. Cluster-12442.3 RNA1509_157, RNA1509_456, RNA1509_1515, RNA1509_1768, RNA1509_16289 9.19 X1 PMP2

RNA1509_157 {Length: 995} {Type: 5UTR_CDS_3UTR} {Pfam: Lipocalin / cytosolic fatty-acid binding protein family [PF00061.18, score=79.9]} {Human: PMP2, peripheral myelin protein 2 [Source:HGNC Symbol;Acc:9117], e=1e-36} {UniRef50_C4N147, e=8e-45, Sodium-calcium exchanger n=2 Tax=Mollusca RepID=C4N147_DORPE [Invertebrates:]} {Drosophila: fabp, fatty acid bindin protein [Source:FlyBase gene name;Acc:FBgn0037913], e=2e-35} {RNA815_7257.1} {RNA1310_38817} {Smed: dd_Smed_v6_599_0_1}

RNA1509_456 {Length: 739} {Type: 5UTR_CDS_3UTR} {Pfam: Lipocalin / cytosolic fatty-acid binding protein family [PF00061.18, score=80.9]} {Human: PMP2, peripheral myelin protein 2 [Source:HGNC Symbol;Acc:9117], e=1e-37} {UniRef50_C4N147, e=8e-45, Sodium-calcium exchanger n=2 Tax=Mollusca RepID=C4N147_DORPE [Invertebrates:]} {Drosophila: fabp, fatty acid bindin protein [Source:FlyBase gene name;Acc:FBgn0037913], e=3e-36} {RNA815_7257.2} {RNA1310_38817} {Smed: dd_Smed_v6_599_0_1}

RNA1509_1515 {Length: 753} {Type: 5UTR_CDS_3UTR} {Pfam: Lipocalin / cytosolic fatty-acid binding protein family [PF00061.18, score=80.8]} {Human: PMP2, peripheral myelin protein 2 [Source:HGNC Symbol;Acc:9117], e=1e-37} {UniRef50_C4N147, e=8e-45, Sodium-calcium exchanger n=2 Tax=Mollusca RepID=C4N147_DORPE [Invertebrates:]} {Drosophila: fabp, fatty acid bindin protein [Source:FlyBase gene name;Acc:FBgn0037913], e=3e-36} {RNA815_7257.2} {RNA1310_38817} {Smed: dd_Smed_v6_599_0_1}

RNA1509_1768 {Length: 686} {Type: 5UTR_CDS_3UTR} {Pfam: Lipocalin / cytosolic fatty-acid binding protein family [PF00061.18, score=81.2]} {Human: PMP2, peripheral myelin protein 2 [Source:HGNC Symbol;Acc:9117], e=7e-38} {UniRef50_C4N147, e=8e-45, Sodium-calcium exchanger n=2 Tax=Mollusca RepID=C4N147_DORPE [Invertebrates:]} {Drosophila: fabp, fatty acid bindin protein [Source:FlyBase gene name;Acc:FBgn0037913], e=2e-36} {RNA815_7257.2} {RNA1310_28923} {Smed: dd_Smed_v6_599_0_1}

RNA1509_16289 {Length: 113} {Type: 5UTR_CDS_3UTR} {RNA815_7257.2} {RNA1310_38817}
2. Cluster-12442.2 RNA1509_61 9.05 X1 PMP2 RNA1509_61 {Length: 1032} {Type: 5UTR_CDS_3UTR} {Pfam: Lipocalin / cytosolic fatty-acid binding protein family [PF00061.18, score=79.8]} {Human: PMP2, peripheral myelin protein 2 [Source:HGNC Symbol;Acc:9117], e=2e-36} {UniRef50_C4N147, e=8e-45, Sodium-calcium exchanger n=2 Tax=Mollusca RepID=C4N147_DORPE [Invertebrates:]} {Drosophila: fabp, fatty acid bindin protein [Source:FlyBase gene name;Acc:FBgn0037913], e=3e-35} {RNA815_7257.1} {RNA1310_38817} {Smed: dd_Smed_v6_599_0_1}
3. Cluster-15550.0 RNA1509_6 8.76 APOB RNA1509_6 {Length: 7655} {Type: 5UTR_CDS_3UTR} {Pfam: Lipoprotein amino terminal region [PF01347.17, score=122.9]} {Human: APOB, apolipoprotein B (including Ag(x) antigen) [Source:HGNC Symbol;Acc:603], e=0.002} {UniRef50_UPI0001CBBED9, e=2e-36, PREDICTED: vitellogenin-1-like isoform X1 n=2 Tax=Saccoglossus kowalevskii RepID=UPI0001CBBED9 [Invertebrates:Hemichordata]} {Drosophila: Rfabg, Retinoid- and fatty acid-binding glycoprotein [Source:FlyBase gene name;Acc:FBgn0087002], e=8e-13} {RNA815_123.1} {RNA1310_450.1}
4. Cluster-11302.0 RNA1509_70 8.6

 Int S/G2/M 

 Germline 

 X2 P4HB RNA1509_70 {Length: 3118} {Type: 5UTR_CDS_3UTR} {Pfam: Thioredoxin [PF00085.15, score=218.4]} {Human: P4HB, prolyl 4-hydroxylase, beta polypeptide [Source:HGNC Symbol;Acc:8548], e=0.0} {UniRef50_P09102, e=0.0, Protein disulfide-isomerase n=26 Tax=Euteleostomi RepID=PDIA1_CHICK [Vertebrates:Chordata]} {Drosophila: Pdi, Protein disulfide isomerase [Source:FlyBase gene name;Acc:FBgn0014002], e=1e-173} {RNA815_1453.1} {RNA1310_2450.1} {Smed: dd_Smed_v6_250_0_1}
5. Cluster-12442.0 RNA1509_18 8.55 Pluripotency repressor FABP3 RNA1509_18 {Length: 682} {Type: 5UTR_CDS_3UTR} {Pfam: Lipocalin / cytosolic fatty-acid binding protein family [PF00061.18, score=30.5]} {Human: FABP3, fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) [Source:HGNC Symbol;Acc:3557], e=4e-14} {Drosophila: fabp, fatty acid bindin protein [Source:FlyBase gene name;Acc:FBgn0037913], e=2e-14} {RNA815_7257.1} {RNA1310_28923}
6. Cluster-7993.11070 RNA1509_288, RNA1509_8471, RNA1509_13494, RNA1509_15438 7.84 SH3RF1

RNA1509_288 {Length: 591} {Type: 5UTR_CDS_3UTR} {Pfam: zinc finger of C3HC4-type, RING [PF15227.1, score=31.5]} {Human: SH3RF1, SH3 domain containing ring finger 1 [Source:HGNC Symbol;Acc:17650], e=4e-10} {UniRef50_UPI0002651AAA, e=4e-07, PREDICTED: uncharacterized protein LOC100888256 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0002651AAA [Invertebrates:Echinodermata]} {Drosophila: POSH, Plenty of SH3s [Source:FlyBase gene name;Acc:FBgn0040294], e=1e-09} {RNA815_18679} {RNA1310_55229}

RNA1509_8471 {Length: 823} {Type: 5UTR_CDS_3UTR} {Pfam: zinc finger of C3HC4-type, RING [PF15227.1, score=29.9]} {Human: SH3RF1, SH3 domain containing ring finger 1 [Source:HGNC Symbol;Acc:17650], e=1e-09} {UniRef50_UPI0002651AAA, e=4e-07, PREDICTED: uncharacterized protein LOC100888256 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0002651AAA [Invertebrates:Echinodermata]} {Drosophila: POSH, Plenty of SH3s [Source:FlyBase gene name;Acc:FBgn0040294], e=4e-09} {RNA815_18679} {RNA1310_30598}

RNA1509_13494 {Length: 927} {Type: 5UTR_CDS_3UTR} {Pfam: zinc finger of C3HC4-type, RING [PF15227.1, score=30.8]} {Human: SH3RF1, SH3 domain containing ring finger 1 [Source:HGNC Symbol;Acc:17650], e=1e-09} {UniRef50_UPI0002651AAA, e=4e-07, PREDICTED: uncharacterized protein LOC100888256 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0002651AAA [Invertebrates:Echinodermata]} {Drosophila: POSH, Plenty of SH3s [Source:FlyBase gene name;Acc:FBgn0040294], e=6e-09} {RNA815_18679} {RNA1310_30598}

RNA1509_15438 {Length: 812} {Type: 5UTR_CDS_3UTR} {Pfam: zinc finger of C3HC4-type, RING [PF15227.1, score=30.9]} {Human: SH3RF1, SH3 domain containing ring finger 1 [Source:HGNC Symbol;Acc:17650], e=9e-10} {UniRef50_UPI0002651AAA, e=4e-07, PREDICTED: uncharacterized protein LOC100888256 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0002651AAA [Invertebrates:Echinodermata]} {Drosophila: POSH, Plenty of SH3s [Source:FlyBase gene name;Acc:FBgn0040294], e=4e-09} {Celegans: rnf-1, Caenorhabditis elegans Protein RNF-1 (rnf-1) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_059337], e=4e-06} {RNA815_18679} {RNA1310_30598}
7. Cluster-7993.11067 RNA1509_1068 7.74 SH3RF1 RNA1509_1068 {Length: 595} {Type: 5UTR_CDS_3UTR} {Pfam: zinc finger of C3HC4-type, RING [PF15227.1, score=31.6]} {Human: SH3RF1, SH3 domain containing ring finger 1 [Source:HGNC Symbol;Acc:17650], e=4e-10} {UniRef50_Q7Q350, e=2e-07, AGAP011487-PA n=1 Tax=Anopheles gambiae RepID=Q7Q350_ANOGA [Invertebrates:Arthropoda]} {Drosophila: POSH, Plenty of SH3s [Source:FlyBase gene name;Acc:FBgn0040294], e=1e-09} {Celegans: rnf-1, Caenorhabditis elegans Protein RNF-1 (rnf-1) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_059337], e=1e-06} {RNA815_18679} {RNA1310_55229}
8. Cluster-6385.1 RNA1509_961, RNA1509_1215 7.55

RNA1509_961 {Length: 1346} {Type: 5UTR_CDS_3UTR} {RNA815_17920} {RNA1310_29151.1}

RNA1509_1215 {Length: 1055} {Type: 5UTR_CDS_3UTR} {RNA815_17920} {RNA1310_29151.1}
9. Cluster-7993.1142 RNA1509_275 7.52 PCCA RNA1509_275 {Length: 2995} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: Carbamoyl-phosphate synthase L chain, ATP binding domain [PF02786.12, score=271.5]} {Human: PCCA, propionyl CoA carboxylase, alpha polypeptide [Source:HGNC Symbol;Acc:8653], e=0.0} {UniRef50_G4V7M2, e=0.0, Putative propionyl-CoA carboxylase alpha subunit n=2 Tax=Schistosoma mansoni RepID=G4V7M2_SCHMA [Invertebrates:Platyhelminthes]} {Drosophila: CG2118, , e=1e-142} {RNA815_1830.1} {RNA1310_9293.1} {Smed: dd_Smed_v6_1247_0_1}
10. Cluster-7993.2684 RNA1509_189 7.45 CTSL2 RNA1509_189 {Length: 1378} {Type: 5UTR_CDS_3UTR} {Pfam: Papain family cysteine protease [PF00112.18, score=290.4]} {Human: CTSL2, cathepsin L2 [Source:HGNC Symbol;Acc:2538], e=1e-112} {UniRef50_C3XVX8, e=1e-124, Putative uncharacterized protein n=56 Tax=Metazoa RepID=C3XVX8_BRAFL [Invertebrates:]} {Drosophila: Cp1, Cysteine proteinase-1 [Source:FlyBase gene name;Acc:FBgn0013770], e=1e-114} {RNA815_7527} {RNA1310_16613}
11. Cluster-7993.1889 RNA1509_9503 7.42 RNA1509_9503 {Length: 875} {Type: 5UTR_CDS_3UTR} {Pfam: Protein of unknown function (DUF3421) [PF11901.3, score=120.9]} {UniRef50_G4V7P2, e=2e-30, Putative uncharacterized protein n=8 Tax=Digenea RepID=G4V7P2_SCHMA [Plants:]} {Drosophila: CG13321, , e=1e-18} {RNA815_908.2} {RNA1310_39489}
12. Cluster-7993.7254 RNA1509_466, RNA1509_9666 7.38

RNA1509_466 {Length: 2508} {Type: 5UTR_CDS_3UTR} {RNA815_3434} {RNA1310_10184.1}

RNA1509_9666 {Length: 2745} {Type: 5UTR_CDS_3UTR} {tRNA: Pseudo(CAC),euk, score=28.40} {RNA815_3434} {RNA1310_10184.1}
13. Cluster-7993.2400 RNA1509_711, RNA1509_9444 7.35 NPC2

RNA1509_711 {Length: 784} {Type: 5UTR_CDS_3UTR} {Pfam: ML domain [PF02221.10, score=52.7]} {Human: NPC2, Niemann-Pick disease, type C2 [Source:HGNC Symbol;Acc:14537], e=6e-07} {UniRef50_C1C1S6, e=1e-12, Mite group 2 allergen Pso o 2 n=2 Tax=Caligidae RepID=C1C1S6_CALCM [Invertebrates:Arthropoda]} {Drosophila: Npc2a, Niemann-Pick type C-2a [Source:FlyBase gene name;Acc:FBgn0031381], e=6e-11} {RNA815_5573.1} {RNA1310_43521}

RNA1509_9444 {Length: 1373} {Type: 5UTR_CDS_3UTR} {Pfam: ML domain [PF02221.10, score=51.1]} {Human: NPC2, Niemann-Pick disease, type C2 [Source:HGNC Symbol;Acc:14537], e=1e-06} {UniRef50_C1C1S6, e=1e-12, Mite group 2 allergen Pso o 2 n=2 Tax=Caligidae RepID=C1C1S6_CALCM [Invertebrates:Arthropoda]} {Drosophila: Npc2a, Niemann-Pick type C-2a [Source:FlyBase gene name;Acc:FBgn0031381], e=2e-09} {RNA815_5573.1} {RNA1310_15986.1}
14. Cluster-1238.0 RNA1509_239 7.33 RNA1509_239 {Length: 1777} {Type: 5UTR_CDS_3UTR} {UniRef50_K1QLQ2, e=4e-40, Uncharacterized protein n=1 Tax=Crassostrea gigas RepID=K1QLQ2_CRAGI [Invertebrates:Mollusca]} {RNA815_7607.1} {RNA1310_18447}
15. Cluster-13773.5 RNA1509_674, RNA1509_11043, RNA1509_11815, RNA1509_26557, RNA1509_30184 7.32 CKMT2; CKM

RNA1509_674 {Length: 1927} {Type: 5UTR_CDS_3UTR} {Pfam: ATP:guanido phosphotransferase, C-terminal catalytic domain [PF00217.14, score=289.9]} {Human: CKM, creatine kinase, muscle [Source:HGNC Symbol;Acc:1994], e=3e-84} {UniRef50_A6XH17, e=1e-130, Arginine kinase n=3 Tax=Metazoa RepID=A6XH17_SUBFI [Invertebrates:]} {Drosophila: Argk, Arginine kinase [Source:FlyBase gene name;Acc:FBgn0000116], e=2e-82} {RNA815_891.1} {RNA1310_2253.2}

RNA1509_11043 {Length: 1752} {Type: 5UTR_CDS_3UTR} {Pfam: ATP:guanido phosphotransferase, C-terminal catalytic domain [PF00217.14, score=290.2]} {Human: CKMT2, creatine kinase, mitochondrial 2 (sarcomeric) [Source:HGNC Symbol;Acc:1996], e=3e-85} {UniRef50_A6XH17, e=1e-130, Arginine kinase n=3 Tax=Metazoa RepID=A6XH17_SUBFI [Invertebrates:]} {Drosophila: Argk, Arginine kinase [Source:FlyBase gene name;Acc:FBgn0000116], e=1e-83} {Celegans: F46H5.3, Caenorhabditis elegans Protein F46H5.3, isoform a. [Source:RefSeq mRNA;Acc:NM_076816], e=5e-82} {RNA815_891.1} {RNA1310_2253.3}

RNA1509_11815 {Length: 1771} {Type: 5UTR_CDS_3UTR} {Pfam: ATP:guanido phosphotransferase, C-terminal catalytic domain [PF00217.14, score=290.2]} {Human: CKM, creatine kinase, muscle [Source:HGNC Symbol;Acc:1994], e=6e-85} {UniRef50_A6XH17, e=1e-131, Arginine kinase n=3 Tax=Metazoa RepID=A6XH17_SUBFI [Invertebrates:]} {Drosophila: Argk, Arginine kinase [Source:FlyBase gene name;Acc:FBgn0000116], e=1e-83} {RNA815_891.1} {RNA1310_2253.1}

RNA1509_26557 {Length: 1817} {Type: 5UTR_CDS_3UTR} {Pfam: ATP:guanido phosphotransferase, C-terminal catalytic domain [PF00217.14, score=290.1]} {Human: CKM, creatine kinase, muscle [Source:HGNC Symbol;Acc:1994], e=1e-84} {UniRef50_A6XH17, e=1e-130, Arginine kinase n=3 Tax=Metazoa RepID=A6XH17_SUBFI [Invertebrates:]} {Drosophila: Argk, Arginine kinase [Source:FlyBase gene name;Acc:FBgn0000116], e=1e-82} {RNA815_891.1} {RNA1310_2253.1}

RNA1509_30184 {Length: 1765} {Type: 5UTR_CDS_3UTR} {Pfam: ATP:guanido phosphotransferase, C-terminal catalytic domain [PF00217.14, score=290.7]} {Human: CKM, creatine kinase, muscle [Source:HGNC Symbol;Acc:1994], e=7e-85} {UniRef50_A6XH17, e=1e-130, Arginine kinase n=3 Tax=Metazoa RepID=A6XH17_SUBFI [Invertebrates:]} {Drosophila: Argk, Arginine kinase [Source:FlyBase gene name;Acc:FBgn0000116], e=6e-83} {RNA815_891.1} {RNA1310_2253.3}
16. Cluster-7993.10760 RNA1509_569, RNA1509_3606 7.27 Sexual_biased; Xins REEP6

RNA1509_569 {Length: 1506} {Type: 5UTR_CDS_3UTR} {Pfam: TB2/DP1, HVA22 family [PF03134.14, score=109.3]} {Human: REEP6, receptor accessory protein 6 [Source:HGNC Symbol;Acc:30078], e=3e-48} {Drosophila: CG8331, , e=7e-36} {RNA815_10513} {RNA1310_19369} {Smed: dd_Smed_v6_838_0_1}

RNA1509_3606 {Length: 1440} {Type: 5UTR_CDS_3UTR} {Pfam: TB2/DP1, HVA22 family [PF03134.14, score=109.4]} {Human: REEP6, receptor accessory protein 6 [Source:HGNC Symbol;Acc:30078], e=2e-48} {Drosophila: CG8331, , e=5e-36} {RNA815_10513} {RNA1310_19369} {Smed: dd_Smed_v6_838_0_1}
17. Cluster-7993.2399 RNA1509_52 7.23 NPC2 RNA1509_52 {Length: 2036} {Type: 5UTR_CDS_3UTR} {Pfam: ML domain [PF02221.10, score=50.3]} {Human: NPC2, Niemann-Pick disease, type C2 [Source:HGNC Symbol;Acc:14537], e=3e-05} {UniRef50_C1C1S6, e=1e-12, Mite group 2 allergen Pso o 2 n=2 Tax=Caligidae RepID=C1C1S6_CALCM [Invertebrates:Arthropoda]} {Drosophila: Npc2a, Niemann-Pick type C-2a [Source:FlyBase gene name;Acc:FBgn0031381], e=2e-09} {RNA815_5573.1} {RNA1310_15986.1}
18. Cluster-12442.4 RNA1509_10933 7.18 RNA1509_10933 {Length: 442} {Type: 5UTR_CDS_3UTR} {RNA815_7257.1} {RNA1310_28923}
19. Cluster-7993.4979 RNA1509_4221, RNA1509_6849, RNA1509_7042 7.18 Sexual_biased GSTA5; HPGDS

RNA1509_4221 {Length: 1070} {Type: 5UTR_CDS_3UTR} {Pfam: Glutathione S-transferase, N-terminal domain [PF02798.15, score=59.2]} {Human: HPGDS, hematopoietic prostaglandin D synthase [Source:HGNC Symbol;Acc:17890], e=6e-18} {UniRef50_T1G2W1, e=2e-31, Uncharacterized protein n=1 Tax=Helobdella robusta RepID=T1G2W1_HELRO [Invertebrates:Annelida]} {Drosophila: GstS1, Glutathione S transferase S1 [Source:FlyBase gene name;Acc:FBgn0010226], e=2e-18} {RNA815_14140.2} {RNA1310_33998.1} {Smed: dd_Smed_v6_1206_0_1}

RNA1509_6849 {Length: 1047} {Type: 5UTR_CDS_3UTR} {Pfam: Glutathione S-transferase, N-terminal domain [PF02798.15, score=58.6]} {Human: HPGDS, hematopoietic prostaglandin D synthase [Source:HGNC Symbol;Acc:17890], e=2e-18} {UniRef50_T1G2W1, e=5e-32, Uncharacterized protein n=1 Tax=Helobdella robusta RepID=T1G2W1_HELRO [Invertebrates:Annelida]} {Drosophila: GstS1, Glutathione S transferase S1 [Source:FlyBase gene name;Acc:FBgn0010226], e=5e-18} {RNA815_14140.2} {RNA1310_33998.1} {Smed: dd_Smed_v6_1206_0_1}

RNA1509_7042 {Length: 1276} {Type: 5UTR_CDS_3UTR} {Pfam: Glutathione S-transferase, C-terminal domain [PF00043.20, score=37.8]} {Human: GSTA5, glutathione S-transferase alpha 5 [Source:HGNC Symbol;Acc:19662], e=0.007} {UniRef50_A0A0C2CCJ5, e=5e-10, Uncharacterized protein (Fragment) n=1 Tax=Ancylostoma duodenale RepID=A0A0C2CCJ5_9BILA [Invertebrates:Nematoda]} {Celegans: gst-34, Caenorhabditis elegans Protein GST-34 (gst-34) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_171053], e=6e-11} {RNA815_13596.1} {RNA1310_50671}
20. Cluster-7993.1888 RNA1509_41182 7.12 RNA1509_41182 {Length: 1147} {Type: 5UTR_CDS_3UTR} {Pfam: Protein of unknown function (DUF3421) [PF11901.3, score=118.0]} {UniRef50_G4V7P2, e=2e-30, Putative uncharacterized protein n=8 Tax=Digenea RepID=G4V7P2_SCHMA [Plants:]} {Drosophila: CG13321, , e=4e-18} {RNA815_16771} {RNA1310_20215}
First Previous 1 2 3 Next Last
Berezikov Lab - 2016 © ERIBA