Graph | Cluster | Transcripts | Mean logCPM | Classification | Smed/Human type | Human gene | Annotation |
---|---|---|---|---|---|---|---|
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Cluster-7993.3417 | RNA1509_235, RNA1509_728 | 8.27 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
Pluripotency maintenance | PPIF | RNA1509_235 {Length: 1500} {Type: 5UTR_CDS_3UTR} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.16, score=156.7]} {Human: PPIF, peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:9259], e=6e-62} {UniRef50_Q93W25, e=4e-77, Peptidyl-prolyl cis-trans isomerase n=121 Tax=cellular organisms RepID=Q93W25_WHEAT [Unassigned:]} {Drosophila: Cyp1, Cyclophilin 1 [Source:FlyBase gene name;Acc:FBgn0004432], e=1e-60} {RNA815_7478.2} {RNA1310_24761} RNA1509_728 {Length: 1028} {Type: 5UTR_CDS_3UTR} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.16, score=158.6]} {Human: PPIF, peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:9259], e=9e-64} {UniRef50_Q93W25, e=4e-77, Peptidyl-prolyl cis-trans isomerase n=121 Tax=cellular organisms RepID=Q93W25_WHEAT [Unassigned:]} {Drosophila: Cyp1, Cyclophilin 1 [Source:FlyBase gene name;Acc:FBgn0004432], e=1e-62} {RNA815_7478.2} {RNA1310_24761} |
|
Cluster-7993.3428 | RNA1509_198, RNA1509_13916 | 7.88 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
Pluripotency maintenance | PPIF | RNA1509_198 {Length: 492} {Type: 5UTR_CDS_3UTR} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.16, score=35.0]} {Human: PPIF, peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:9259], e=2e-11} {Drosophila: CG7768, , e=2e-11} {RNA815_7478.2} {RNA1310_24761} RNA1509_13916 {Length: 473} {Type: 5UTR_CDS_3UTR} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.16, score=35.1]} {Human: PPIF, peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:9259], e=2e-11} {Drosophila: CG7768, , e=1e-11} {RNA815_7478.2} {RNA1310_24761} |
|
Cluster-1698.0 | RNA1509_635 | 7.32 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
X1 | PRMT1 | RNA1509_635 {Length: 2074} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: Ribosomal protein L11 methyltransferase (PrmA) [PF06325.8, score=42.8]} {Human: PRMT1, protein arginine methyltransferase 1 [Source:HGNC Symbol;Acc:5187], e=1e-169} {UniRef50_E9J265, e=1e-178, Putative uncharacterized protein (Fragment) n=35 Tax=Hymenoptera RepID=E9J265_SOLIN [Invertebrates:Arthropoda]} {Drosophila: Art1, Arginine methyltransferase 1 [Source:FlyBase gene name;Acc:FBgn0037834], e=1e-170} {RNA815_7554} {RNA1310_17985} {Smed: dd_Smed_v6_1755_0_1} |
|
Cluster-12643.0 | RNA1509_320 | 7.26 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
Sexual_biased | NAP1L1 | RNA1509_320 {Length: 2087} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: Nucleosome assembly protein (NAP) [PF00956.13, score=262.6]} {Human: NAP1L1, nucleosome assembly protein 1-like 1 [Source:HGNC Symbol;Acc:7637], e=4e-69} {UniRef50_C1LHF9, e=6e-70, NAP-1-related protein n=5 Tax=Digenea RepID=C1LHF9_SCHJA [Plants:]} {Drosophila: Nap1, Nucleosome assembly protein 1 [Source:FlyBase gene name;Acc:FBgn0015268], e=3e-52} {RNA815_5138.1} {RNA1310_13378} {Smed: dd_Smed_v6_997_0_1} |
|
Cluster-13316.4 | RNA1509_225, RNA1509_7006 | 7.18 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
X1 | SERBP1 | RNA1509_225 {Length: 2997} {Type: 5UTR_CDS_3UTR} {Pfam: Hyaluronan / mRNA binding family [PF04774.10, score=62.6]} {Human: SERBP1, SERPINE1 mRNA binding protein 1 [Source:HGNC Symbol;Acc:17860], e=3e-13} {UniRef50_K1RAY9, e=8e-16, Plasminogen activator inhibitor 1 RNA-binding protein n=2 Tax=Crassostrea gigas RepID=K1RAY9_CRAGI [Invertebrates:Mollusca]} {Drosophila: vig2, vig2 [Source:FlyBase gene name;Acc:FBgn0046214], e=2e-14} {RNA815_4163.1} {RNA1310_11680.1} {Smed: dd_Smed_v6_697_0_1} RNA1509_7006 {Length: 2935} {Type: 5UTR_CDS_3UTR} {Pfam: Hyaluronan / mRNA binding family [PF04774.10, score=62.6]} {Human: SERBP1, SERPINE1 mRNA binding protein 1 [Source:HGNC Symbol;Acc:17860], e=3e-13} {UniRef50_K1RAY9, e=8e-16, Plasminogen activator inhibitor 1 RNA-binding protein n=2 Tax=Crassostrea gigas RepID=K1RAY9_CRAGI [Invertebrates:Mollusca]} {Drosophila: vig2, vig2 [Source:FlyBase gene name;Acc:FBgn0046214], e=2e-14} {Celegans: vig-1, Caenorhabditis elegans Protein VIG-1, isoform a (vig-1) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_170974], e=1e-06} {RNA815_4163.1} {RNA1310_11680.1} {Smed: dd_Smed_v6_697_0_1} |
|
Cluster-7993.10654 | RNA1509_548 | 7.02 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
X1 | RPL4 | RNA1509_548 {Length: 1356} {Type: 5UTR_CDS_3UTR} {Pfam: Ribosomal protein L4/L1 family [PF00573.17, score=155.1]} {Human: RPL4, ribosomal protein L4 [Source:HGNC Symbol;Acc:10353], e=1e-151} {UniRef50_P02385, e=1e-145, 60S ribosomal protein L4-B n=113 Tax=Eukaryota RepID=RL4B_XENLA [Invertebrates:]} {Drosophila: RpL4, Ribosomal protein L4 [Source:FlyBase gene name;Acc:FBgn0003279], e=1e-138} {RNA815_10660} {RNA1310_26790} {Smed: dd_Smed_v6_211_0_1} |
|
Cluster-12643.3 | RNA1509_2923 | 6.73 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
RNA1509_2923 {Length: 1474} {Type: 5UTR_CDS_3UTR} {RNA815_5138.1} {RNA1310_31879} | ||
|
Cluster-7993.1647 | RNA1509_1412, RNA1509_17704 | 6.73 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
HSPE1 | RNA1509_1412 {Length: 765} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: Chaperonin 10 Kd subunit [PF00166.16, score=84.3]} {Human: HSPE1, heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269], e=5e-38} {UniRef50_Q5DC69, e=1e-40, 10 kDa heat shock protein, mitochondrial n=92 Tax=Eukaryota RepID=CH10_SCHJA [Invertebrates:]} {Drosophila: CG11267, , e=2e-32} {Celegans: Y22D7AL.10, Caenorhabditis elegans Protein Y22D7AL.10 (Y22D7AL.10) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_065027], e=7e-33} {RNA815_25861} {RNA1310_51233.2} RNA1509_17704 {Length: 746} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: Chaperonin 10 Kd subunit [PF00166.16, score=84.3]} {Human: HSPE1, heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269], e=4e-38} {UniRef50_Q5DC69, e=1e-40, 10 kDa heat shock protein, mitochondrial n=92 Tax=Eukaryota RepID=CH10_SCHJA [Invertebrates:]} {Drosophila: CG11267, , e=2e-32} {RNA815_25861} {RNA1310_51233.2} |
|
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Cluster-7993.3856 | RNA1509_2237, RNA1509_3397, RNA1509_7085 | 6.58 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
RNA1509_2237 {Length: 681} {Type: 5UTR_CDS_3UTR} {RNA815_11385} {RNA1310_71433} RNA1509_3397 {Length: 575} {Type: 5UTR_CDS_3UTR} {RNA815_11385} {RNA1310_45919} RNA1509_7085 {Length: 698} {Type: 5UTR_CDS_3UTR} {RNA815_11385} {RNA1310_71433} |
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Cluster-16057.5 | RNA1509_625, RNA1509_2152, RNA1509_20002 | 6.45 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
X1 | HSPD1 | RNA1509_625 {Length: 3317} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: TCP-1/cpn60 chaperonin family [PF00118.19, score=387.5]} {Human: HSPD1, heat shock 60kDa protein 1 (chaperonin) [Source:HGNC Symbol;Acc:5261], e=0.0} {UniRef50_O02649, e=0.0, 60 kDa heat shock protein, mitochondrial n=197 Tax=cellular organisms RepID=CH60_DROME [Unassigned:]} {Drosophila: Hsp60, Heat shock protein 60 [Source:FlyBase gene name;Acc:FBgn0015245], e=0.0} {RNA815_2657} {RNA1310_7721.1} {Smed: dd_Smed_v6_141_0_1} RNA1509_2152 {Length: 2441} {Type: 5UTR_CDS_3UTR} {Pfam: TCP-1/cpn60 chaperonin family [PF00118.19, score=390.4]} {Human: HSPD1, heat shock 60kDa protein 1 (chaperonin) [Source:HGNC Symbol;Acc:5261], e=0.0} {UniRef50_O02649, e=0.0, 60 kDa heat shock protein, mitochondrial n=197 Tax=cellular organisms RepID=CH60_DROME [Unassigned:]} {Drosophila: Hsp60, Heat shock protein 60 [Source:FlyBase gene name;Acc:FBgn0015245], e=0.0} {RNA815_2657} {RNA1310_7721.1} {Smed: dd_Smed_v6_141_0_1} RNA1509_20002 {Length: 2078} {Type: 5UTR_CDS_3UTR} {Pfam: TCP-1/cpn60 chaperonin family [PF00118.19, score=267.4]} {Human: HSPD1, heat shock 60kDa protein 1 (chaperonin) [Source:HGNC Symbol;Acc:5261], e=0.0} {UniRef50_Q803B0, e=0.0, Heat shock 60kD protein 1 (Chaperonin) n=56 Tax=Bilateria RepID=Q803B0_DANRE [Invertebrates:]} {Drosophila: Hsp60, Heat shock protein 60 [Source:FlyBase gene name;Acc:FBgn0015245], e=0.0} {Celegans: hsp-60, Caenorhabditis elegans Protein HSP-60, isoform a (hsp-60) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_065028], e=0.0} {RNA815_2657} {RNA1310_7721.1} |
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Cluster-11360.1 | RNA1509_2873 | 6.44 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
X1 | FBL | RNA1509_2873 {Length: 1657} {Type: 5UTR_CDS_3UTR} {Pfam: Fibrillarin [PF01269.12, score=356.2]} {Human: FBL, fibrillarin [Source:HGNC Symbol;Acc:3599], e=1e-113} {UniRef50_W6UW56, e=1e-121, rRNA 2'-O-methyltransferase fibrillarin n=3 Tax=Echinococcus RepID=W6UW56_ECHGR [Invertebrates:Platyhelminthes]} {Drosophila: Fib, Fibrillarin [Source:FlyBase gene name;Acc:FBgn0003062], e=1e-117} {RNA815_13797} {RNA1310_19218} {Smed: dd_Smed_v6_2811_0_1} |
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Cluster-13316.2 | RNA1509_25525, RNA1509_35575 | 6.41 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
RNA1509_25525 {Length: 1136} {Type: 5UTR_CDS_3UTR} {RNA815_4163.1} {RNA1310_28652} RNA1509_35575 {Length: 851} {Type: 5UTR_CDS_3UTR} {RNA815_4163.1} {RNA1310_28652} |
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Cluster-1134.0 | RNA1509_4518, RNA1509_6214, RNA1509_18636 | 6.31 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
Epidermal progenitors (late) | H2AFV | RNA1509_4518 {Length: 1007} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: Core histone H2A/H2B/H3/H4 [PF00125.19, score=73.6]} {Human: H2AFV, H2A histone family, member V [Source:HGNC Symbol;Acc:20664], e=7e-64} {UniRef50_Q71UI9, e=1e-66, Histone H2A.V n=72 Tax=Bilateria RepID=H2AV_HUMAN [Invertebrates:]} {Drosophila: His2Av, Histone H2A variant [Source:FlyBase gene name;Acc:FBgn0001197], e=3e-63} {RNA815_1839.1} {RNA1310_60280} {Smed: dd_Smed_v6_1484_0_1} {WURTZEL: Epidermal progenitors (late) [dd_Smed_v6_1484_0_1, proprotein convertase subtilisin/kexin type 1 (PCSK1)]} RNA1509_6214 {Length: 998} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: Core histone H2A/H2B/H3/H4 [PF00125.19, score=73.8]} {Human: H2AFV, H2A histone family, member V [Source:HGNC Symbol;Acc:20664], e=6e-64} {UniRef50_Q71UI9, e=1e-66, Histone H2A.V n=72 Tax=Bilateria RepID=H2AV_HUMAN [Invertebrates:]} {Drosophila: His2Av, Histone H2A variant [Source:FlyBase gene name;Acc:FBgn0001197], e=3e-63} {RNA815_1839.1} {RNA1310_67786} {Smed: dd_Smed_v6_1484_0_1} {WURTZEL: Epidermal progenitors (late) [dd_Smed_v6_1484_0_1, proprotein convertase subtilisin/kexin type 1 (PCSK1)]} RNA1509_18636 {Length: 1138} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: Core histone H2A/H2B/H3/H4 [PF00125.19, score=73.5]} {Human: H2AFV, H2A histone family, member V [Source:HGNC Symbol;Acc:20664], e=2e-63} {UniRef50_Q71UI9, e=1e-66, Histone H2A.V n=72 Tax=Bilateria RepID=H2AV_HUMAN [Invertebrates:]} {Drosophila: His2Av, Histone H2A variant [Source:FlyBase gene name;Acc:FBgn0001197], e=1e-62} {RNA815_1839.1} {RNA1310_67786} {Smed: dd_Smed_v6_1484_0_1} {WURTZEL: Epidermal progenitors (late) [dd_Smed_v6_1484_0_1, proprotein convertase subtilisin/kexin type 1 (PCSK1)]} |
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Cluster-15054.0 | RNA1509_490 | 6.26 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
PTMA | RNA1509_490 {Length: 1742} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Human: PTMA, prothymosin, alpha [Source:HGNC Symbol;Acc:9623], e=4e-04} {Drosophila: Sh3beta, Sh3beta [Source:FlyBase gene name;Acc:FBgn0035772], e=5e-05} {RNA815_7117} {RNA1310_18032} | |
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Cluster-7993.7351 | RNA1509_1760, RNA1509_10409 | 6.17 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
X1 | RBBP4 | RNA1509_1760 {Length: 4149} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: WD domain, G-beta repeat [PF00400.27, score=126.9]} {Human: RBBP4, retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887], e=0.0} {UniRef50_V3Z0T5, e=8e-52, Uncharacterized protein n=2 Tax=Protostomia RepID=V3Z0T5_LOTGI [Invertebrates:]} {Drosophila: Caf1, Chromatin assembly factor 1 subunit [Source:FlyBase gene name;Acc:FBgn0263979], e=0.0} {RNA815_6795} {RNA1310_2174.1} {Smed: dd_Smed_v6_2065_0_1} RNA1509_10409 {Length: 1778} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: WD domain, G-beta repeat [PF00400.27, score=134.6]} {Human: RBBP4, retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887], e=0.0} {UniRef50_Q09028, e=0.0, Histone-binding protein RBBP4 n=483 Tax=Opisthokonta RepID=RBBP4_HUMAN [Plants:]} {Drosophila: Caf1, Chromatin assembly factor 1 subunit [Source:FlyBase gene name;Acc:FBgn0263979], e=0.0} {RNA815_6795} {RNA1310_2174.1} {Smed: dd_Smed_v6_2065_0_1} |
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Cluster-12450.2 | RNA1509_632 | 6.16 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
Sexual_biased; X1 | DDX39B | RNA1509_632 {Length: 2430} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: DEAD/DEAH box helicase [PF00270.24, score=134.3]} {Human: DDX39B, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:HGNC Symbol;Acc:13917], e=0.0} {UniRef50_Q13838, e=0.0, Spliceosome RNA helicase DDX39B n=198 Tax=Opisthokonta RepID=DX39B_HUMAN [Plants:]} {Drosophila: Hel25E, Helicase at 25E [Source:FlyBase gene name;Acc:FBgn0014189], e=0.0} {RNA815_6753} {RNA1310_17749} {Smed: dd_Smed_v6_724_0_1} |
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Cluster-7993.10164 | RNA1509_8448 | 6.14 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
Neoblast; X1 | H3F3A | RNA1509_8448 {Length: 1835} {Type: 5UTR_CDS_3UTR} {Pfam: Core histone H2A/H2B/H3/H4 [PF00125.19, score=109.6]} {Human: H3F3A, H3 histone, family 3A [Source:HGNC Symbol;Acc:4764], e=1e-85} {UniRef50_P84243, e=8e-94, Histone H3.3 n=246 Tax=Eukaryota RepID=H33_HUMAN [Invertebrates:]} {Drosophila: His3.3A, Histone H3.3A [Source:FlyBase gene name;Acc:FBgn0014857], e=6e-86} {RNA815_29946.2} {RNA1310_38582.1} {Smed: dd_Smed_v6_532_0_1,dd_Smed_v6_8630_0_1,dd_Smed_v6_13347_0_1} {WURTZEL: Neoblast [dd_Smed_v6_13347_0_1, histone cluster 2, H3c (HIST2H3C)]} |
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Cluster-12450.1 | RNA1509_10881 | 6.13 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
DDX39B | RNA1509_10881 {Length: 1326} {Type: 5UTR_CDS_3UTR} {Pfam: Helicase conserved C-terminal domain [PF00271.26, score=79.5]} {Human: DDX39B, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:HGNC Symbol;Acc:13917], e=2e-69} {UniRef50_Q3UAF1, e=1e-76, Putative uncharacterized protein n=11 Tax=Eukaryota RepID=Q3UAF1_MOUSE [Invertebrates:]} {Drosophila: Hel25E, Helicase at 25E [Source:FlyBase gene name;Acc:FBgn0014189], e=2e-69} {RNA815_6753} {RNA1310_11845} | |
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Cluster-12327.1 | RNA1509_18061 | 6.13 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
H1F0 | RNA1509_18061 {Length: 1257} {Type: 5UTR_CDS_3UTR} {Pfam: linker histone H1 and H5 family [PF00538.14, score=77.6]} {Human: H1F0, H1 histone family, member 0 [Source:HGNC Symbol;Acc:4714], e=1e-09} {UniRef50_Q94750, e=4e-14, Histone H1 (Fragment) n=1 Tax=Schistosoma mansoni RepID=Q94750_SCHMA [Invertebrates:Platyhelminthes]} {Drosophila: His1:CG33804, His1:CG33804 [Source:FlyBase gene name;Acc:FBgn0053804], e=8e-11} {RNA815_11387.1} {RNA1310_43242} | |
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Cluster-7993.10157 | RNA1509_4525, RNA1509_6065, RNA1509_6684 | 6.09 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
RNA1509_4525 {Length: 740} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {RNA815_26745.1} {RNA1310_25332.2} RNA1509_6065 {Length: 764} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {RNA815_26745.1} {RNA1310_25332.2} RNA1509_6684 {Length: 787} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {RNA815_26745.1} {RNA1310_25332.2} |