M. lignano Neoblast Screen 2016 Transcriptional signatures of somatic neoblasts and germline cells in Macrostomum lignano. (2016) Grudniewska M*, Mouton S*, Simanov S, Beltman F, Grelling M, de Mulder K, Arindrarto W, Weissert P, van der Elst S, Berezikov E. eLife 2016;5:e20607. Home Download

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Found 1302 results for log2(CutG2M/CutG1) <= -1 and fdr <= 0.05. Showing entries 1-20.

Graph Cluster Transcripts Mean logCPM Classification Smed/Human type Human gene Annotation
1. Cluster-3215.1 RNA1509_1778, RNA1509_2506 8.16 DYNLL1

RNA1509_1778 {Length: 1222} {Type: 5UTR_CDS_3UTR} {Pfam: Dynein light chain type 1 [PF01221.13, score=80.8]} {Human: DYNLL1, dynein, light chain, LC8-type 1 [Source:HGNC Symbol;Acc:15476], e=3e-15} {Drosophila: ctp, cut up [Source:FlyBase gene name;Acc:FBgn0011760], e=6e-15} {RNA815_14543} {RNA1310_44901.1}

RNA1509_2506 {Length: 1081} {TRANSSPLICED} {Type: 5UTR_CDS_3UTR} {Pfam: Dynein light chain type 1 [PF01221.13, score=81.1]} {Human: DYNLL1, dynein, light chain, LC8-type 1 [Source:HGNC Symbol;Acc:15476], e=2e-15} {Drosophila: ctp, cut up [Source:FlyBase gene name;Acc:FBgn0011760], e=5e-15} {RNA815_14543} {RNA1310_44901.1}
2. Cluster-7993.5007 RNA1509_143 7.57

 Irradiation 

 HSPB6 RNA1509_143 {Length: 816} {Type: 5UTR_CDS_3UTR} {Pfam: Hsp20/alpha crystallin family [PF00011.16, score=56.2]} {Human: HSPB6, heat shock protein, alpha-crystallin-related, B6 [Source:HGNC Symbol;Acc:26511], e=0.004} {Drosophila: CG14207, , e=1e-04} {Celegans: hsp-25, Caenorhabditis elegans Protein HSP-25, isoform a. [Source:RefSeq mRNA;Acc:NM_001029203], e=3e-06} {RNA815_5698.2} {RNA1310_17173.1}
3. Cluster-7993.10534 RNA1509_576 7.46 Muscle; Asexual_biased; Xins MYL12A RNA1509_576 {Length: 2749} {Type: 5UTR_CDS_3UTR} {tRNA: Pseudo(CAC),euk, score=25.30} {Pfam: EF-hand domain pair [PF13499.1, score=47.4]} {Human: MYL12A, myosin, light chain 12A, regulatory, non-sarcomeric [Source:HGNC Symbol;Acc:16701], e=2e-57} {UniRef50_A0A075A7F5, e=5e-84, Uncharacterized protein n=1 Tax=Opisthorchis viverrini RepID=A0A075A7F5_9TREM [Invertebrates:Platyhelminthes]} {Drosophila: sqh, spaghetti squash [Source:FlyBase gene name;Acc:FBgn0003514], e=3e-56} {RNA815_2093.1} {RNA1310_16012.1} {Smed: dd_Smed_v6_445_0_1,dd_Smed_v6_803_0_1} {WURTZEL: Muscle [dd_Smed_v6_445_0_1, unknown] ## Muscle [dd_Smed_v6_803_0_1, myosin, light chain 12B, regulatory (MYL12B)]}
4. Cluster-11233.6 RNA1509_2727, RNA1509_46771 7.45 SLC16A14

RNA1509_2727 {Length: 1904} {Type: 5UTR_CDS_3UTR} {RNA815_9650} {RNA1310_12162}

RNA1509_46771 {Length: 2399} {Type: 5UTR_CDS_3UTR} {Pfam: Major Facilitator Superfamily [PF07690.11, score=108.0]} {Human: SLC16A14, solute carrier family 16, member 14 (monocarboxylic acid transporter 14) [Source:HGNC Symbol;Acc:26417], e=1e-24} {UniRef50_V4ADB8, e=2e-84, Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea RepID=V4ADB8_LOTGI [Invertebrates:Mollusca]} {Drosophila: Mct1, Monocarboxylate transporter 1 [Source:FlyBase gene name;Acc:FBgn0023549], e=1e-70} {RNA815_9650} {RNA1310_12162}
5. Cluster-7993.7254 RNA1509_466, RNA1509_9666 7.38

RNA1509_466 {Length: 2508} {Type: 5UTR_CDS_3UTR} {RNA815_3434} {RNA1310_10184.1}

RNA1509_9666 {Length: 2745} {Type: 5UTR_CDS_3UTR} {tRNA: Pseudo(CAC),euk, score=28.40} {RNA815_3434} {RNA1310_10184.1}
6. Cluster-13255.0 RNA1509_252 7.32 RNA1509_252 {Length: 1845} {Type: 5UTR_CDS_3UTR} {UniRef50_H2Z6K8, e=2e-04, Uncharacterized protein n=1 Tax=Ciona savignyi RepID=H2Z6K8_CIOSA [Invertebrates:Chordata]} {RNA815_6338.1} {RNA1310_4046.2}
7. Cluster-4175.0 RNA1509_1053, RNA1509_1110, RNA1509_1758 7.17

RNA1509_1053 {Length: 1404} {Type: 5UTR_CDS_3UTR} {Pfam: Pacifastin inhibitor (LCMII) [PF05375.8, score=32.2]} {RNA815_14544} {RNA1310_34072.1}

RNA1509_1110 {Length: 1293} {Type: 5UTR_CDS_3UTR} {Pfam: Pacifastin inhibitor (LCMII) [PF05375.8, score=32.3]} {RNA815_14544} {RNA1310_34072.1}

RNA1509_1758 {Length: 1204} {Type: 5UTR_CDS_3UTR} {Pfam: Pacifastin inhibitor (LCMII) [PF05375.8, score=27.4]} {RNA815_14544} {RNA1310_34072.1}
8. Cluster-7993.2471 RNA1509_272, RNA1509_1513, RNA1509_11555 7.08

 Irradiation 

RNA1509_272 {Length: 606} {Type: 5UTR_CDS_3UTR} {Pfam: PAN domain [PF14295.1, score=29.8]} {UniRef50_UPI0002B47738, e=1e-30, PREDICTED: uncharacterized protein LOC101238014 n=1 Tax=Hydra vulgaris RepID=UPI0002B47738 [Invertebrates:Cnidaria]} {RNA815_28801.1} {RNA1310_65774.1}

RNA1509_1513 {Length: 591} {Type: 5UTR_CDS_3UTR} {Pfam: PAN domain [PF14295.1, score=29.8]} {UniRef50_UPI0002B47738, e=1e-30, PREDICTED: uncharacterized protein LOC101238014 n=1 Tax=Hydra vulgaris RepID=UPI0002B47738 [Invertebrates:Cnidaria]} {RNA815_28801.1} {RNA1310_65774.1}

RNA1509_11555 {Length: 572} {Type: 5UTR_CDS_3UTR} {Pfam: PAN domain [PF14295.1, score=30.0]} {UniRef50_UPI0002B47738, e=1e-30, PREDICTED: uncharacterized protein LOC101238014 n=1 Tax=Hydra vulgaris RepID=UPI0002B47738 [Invertebrates:Cnidaria]} {RNA815_28801.2} {RNA1310_65774.3}
9. Cluster-7993.2843 RNA1509_298, RNA1509_5624 7.06

 Irradiation 

RNA1509_298 {Length: 867} {Type: 5UTR_CDS_3UTR} {Pfam: EF-hand domain [PF13405.1, score=26.3]} {RNA815_20222.2} {RNA1310_41187}

RNA1509_5624 {Length: 843} {Type: 5UTR_CDS_3UTR} {Pfam: EF-hand domain [PF13405.1, score=26.4]} {RNA815_20222.2} {RNA1310_41187}
10. Cluster-7993.614 RNA1509_1455 7.03 SELENBP1 RNA1509_1455 {Length: 2213} {Type: 5UTR_CDS_3UTR} {Pfam: 56kDa selenium binding protein (SBP56) [PF05694.6, score=662.8]} {Human: SELENBP1, selenium binding protein 1 [Source:HGNC Symbol;Acc:10719], e=0.0} {UniRef50_F7DNQ5, e=0.0, Uncharacterized protein n=57 Tax=Amniota RepID=F7DNQ5_CALJA [Vertebrates:Chordata]} {Drosophila: CG7966, , e=1e-162} {Celegans: Y37A1B.5, Caenorhabditis elegans Protein Y37A1B.5, isoform a (Y37A1B.5) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_001268848], e=1e-177} {RNA815_5156} {RNA1310_13697}
11. Cluster-9514.1 RNA1509_7792 6.95 RNA1509_7792 {Length: 617} {Type: 5UTR_CDS_3UTR} {RNA815_25479} {RNA1310_55355}
12. Cluster-7993.2758 RNA1509_1306, RNA1509_15501 6.92 CHRNA10

RNA1509_1306 {Length: 1098} {Type: 5UTR_CDS_3UTR} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.18, score=77.9]} {Human: CHRNA10, cholinergic receptor, nicotinic, alpha 10 [Source:HGNC Symbol;Acc:13800], e=3e-20} {UniRef50_I1SKH0, e=2e-26, Soluble acetylcholine binding protein n=1 Tax=Pleurobranchaea californica RepID=I1SKH0_9GAST [Invertebrates:Mollusca]} {Drosophila: nAChRalpha7, nicotinic Acetylcholine Receptor alpha7 [Source:FlyBase gene name;Acc:FBgn0086778], e=2e-22} {Celegans: acr-19, Caenorhabditis elegans Protein ACR-19, isoform b (acr-19) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_001136284], e=4e-24} {RNA815_15305.1} {RNA1310_34970}

RNA1509_15501 {Length: 1060} {Type: 5UTR_CDS_3UTR} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.18, score=78.0]} {Human: CHRNA10, cholinergic receptor, nicotinic, alpha 10 [Source:HGNC Symbol;Acc:13800], e=2e-20} {UniRef50_I1SKH0, e=2e-26, Soluble acetylcholine binding protein n=1 Tax=Pleurobranchaea californica RepID=I1SKH0_9GAST [Invertebrates:Mollusca]} {Drosophila: nAChRalpha7, nicotinic Acetylcholine Receptor alpha7 [Source:FlyBase gene name;Acc:FBgn0086778], e=2e-22} {RNA815_15305.1} {RNA1310_34970}
13. Cluster-7993.2842 RNA1509_3622 6.91

 Irradiation 

 RNA1509_3622 {Length: 694} {Type: 5UTR_CDS_3UTR} {Pfam: EF-hand domain [PF13405.1, score=26.8]} {RNA815_20222.2} {RNA1310_41187}
14. Cluster-9514.2 RNA1509_3664 6.88 RNA1509_3664 {Length: 544} {Type: 5UTR_CDS_3UTR} {RNA815_25479} {RNA1310_55355}
15. Cluster-7993.2841 RNA1509_2542 6.87

 Irradiation 

 RNA1509_2542 {Length: 740} {Type: 5UTR_CDS_3UTR} {Pfam: EF-hand domain [PF13405.1, score=26.8]} {Drosophila: Muc96D, Mucin 96D [Source:FlyBase gene name;Acc:FBgn0051439], e=0.004} {RNA815_20222.2} {RNA1310_41187}
16. Cluster-7993.6278 RNA1509_24497 6.84 ACTB RNA1509_24497 {Length: 833} {Type: 5UTR_CDS_3UTR} {Pfam: Actin [PF00022.14, score=218.5]} {Human: ACTB, actin, beta [Source:HGNC Symbol;Acc:132], e=4e-93} {Drosophila: Act5C, Actin 5C [Source:FlyBase gene name;Acc:FBgn0000042], e=2e-91} {RNA815_10170} {RNA1310_20267.1}
17. Cluster-7416.0 RNA1509_7451, RNA1509_11051 6.83

RNA1509_7451 {Length: 594} {Type: 5UTR_CDS_3UTR} {RNA815_29534} {RNA1310_64161}

RNA1509_11051 {Length: 577} {Type: 5UTR_CDS_3UTR} {RNA815_29534} {RNA1310_64161}
18. Cluster-3802.0 RNA1509_1603 6.81 RCN1 RNA1509_1603 {Length: 1802} {Type: 5UTR_CDS_3UTR} {Pfam: EF-hand domain pair [PF13499.1, score=81.3]} {Human: RCN1, reticulocalbin 1, EF-hand calcium binding domain [Source:HGNC Symbol;Acc:9934], e=1e-45} {UniRef50_G5EBH7, e=4e-52, CALU-1, isoform a n=25 Tax=Nematoda RepID=G5EBH7_CAEEL [Invertebrates:]} {Drosophila: scf, supercoiling factor [Source:FlyBase gene name;Acc:FBgn0025682], e=3e-51} {RNA815_1364} {RNA1310_4377}
19. Cluster-15013.0 RNA1509_42 6.8

 Irradiation 

 Int S/G2/M 

 Germline 

 RNA1509_42 {Length: 2610} {Type: 5UTR_CDS_3UTR} {Pfam: Immunoglobulin I-set domain [PF07679.11, score=43.6]} {Drosophila: CG13506, , e=7e-05} {RNA815_3639} {RNA1310_10769}
20. Cluster-7993.2468 RNA1509_3215 6.79

 Irradiation 

 RNA1509_3215 {Length: 577} {Type: 5UTR_CDS_3UTR} {Pfam: PAN domain [PF14295.1, score=31.7]} {UniRef50_UPI0002B47738, e=1e-30, PREDICTED: uncharacterized protein LOC101238014 n=1 Tax=Hydra vulgaris RepID=UPI0002B47738 [Invertebrates:Cnidaria]} {RNA815_28801.2} {RNA1310_65774.3}
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